Volume 13; Issue 7 Suppleme

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BMC Genomics
Volume 13; Issue 7 Suppleme

BMC Genomics

Volume 13; Issue 7 Suppleme

1

Advances in translational bioinformatics and population genomics in the Asia-Pacific

Shoba Ranagathan, Sissades Tongsima, Jonathan Chan, Tin Wee Tan…

Journal:

Year:

2012

Language:

english

File:

PDF, 125 KB

english, 2012

2

Quantitative assessment of mitochondrial DNA copies from whole genome sequencing

Hsueh-Ting Chu, William WL Hsiao, Theresa TH Tsao, Ching-Mao Chang…

Journal:

Year:

2012

Language:

english

File:

PDF, 340 KB

english, 2012

3

In silicoengineering of aggregation-prone recombinant proteins for substrate recognition by the chaperonin GroEL

Vipul Kumar, Ankita Punetha, Durai Sundar, Tapan K Chaudhuri

Journal:

Year:

2012

Language:

english

File:

PDF, 616 KB

english, 2012

4

Feasibility of using 454 pyrosequencing for studying quasispecies of the whole dengue viral genome

Kwanrutai Chin-inmanu, Aroonroong Suttitheptumrong, Duangjai Sangsrakru…

Journal:

Year:

2012

Language:

english

File:

PDF, 382 KB

english, 2012

5

Integration of interactive, multi-scale network navigation approach with Cytoscape for functional genomics in the big data era

Thanet Praneenararat, Toshihisa Takagi, Wataru Iwasaki

Journal:

Year:

2012

Language:

english

File:

PDF, 841 KB

english, 2012

6

FastAnnotator- an efficient transcript annotation web tool

Ting-Wen Chen, Ruei-Chi Richie Gan, Timothy H Wu, Po-Jung Huang…

Journal:

Year:

2012

Language:

english

File:

PDF, 353 KB

english, 2012

7

A computational tool for the design of live attenuated virus vaccine based on microRNA-mediated gene silencing

Duangdao Wichadakul, Wuttichai Mhuantong, Anan Jongkaewwattana…

Journal:

Year:

2012

Language:

english

File:

PDF, 845 KB

english, 2012

8

snpTree - a web-server to identify and construct SNP trees from whole genome sequence data

Pimlapas Leekitcharoenphon, Rolf S Kaas, Martin Christen Frølund Thomsen…

Journal:

Year:

2012

Language:

english

File:

PDF, 642 KB

english, 2012

9

An analysis of the transcriptome ofTeladorsagia circumcincta:its biological and biotechnological implications

Ranjeeta Menon, Robin B Gasser, Makedonka Mitreva, Shoba Ranganathan

Journal:

Year:

2012

Language:

english

File:

PDF, 544 KB

english, 2012

10

Meta-analytical biomarker search of EST expression data reveals three differentially expressed candidates

Timothy H Wu, Lichieh J Chu, Jian-Chiao Wang, Ting-Wen Chen, Yin-Jing Tien…

Journal:

Year:

2012

Language:

english

File:

PDF, 853 KB

english, 2012

11

Preferential regulation of stably expressed genes in the human genome suggests a widespread expression buffering role of microRNAs

Zhen Yang, Dong Dong, Zhaolei Zhang, M James C Crabbe, Li Wang, Yang Zhong

Journal:

Year:

2012

Language:

english

File:

PDF, 267 KB

english, 2012

12

Bayesian prediction of bacterial growth temperature range based on genome sequences

Dan B Jensen, Tammi C Vesth, Peter F Hallin, Anders G Pedersen…

Journal:

Year:

2012

Language:

english

File:

PDF, 1.11 MB

english, 2012

13

C-mii: a tool for plant miRNA and target identification

Somrak Numnark, Wuttichai Mhuantong, Supawadee Ingsriswang…

Journal:

Year:

2012

Language:

english

File:

PDF, 688 KB

english, 2012

14

Blocking Protein kinase C signaling pathway: mechanistic insights into the anti-leishmanial activity of prospective herbal drugs fromWithania somnifera

Abhinav Grover, Shashank Prakash Katiyar, Jeyaraman Jeyakanthan…

Journal:

Year:

2012

Language:

english

File:

PDF, 807 KB

english, 2012

15

Comprehensive analysis of microRNAs in breast cancer

Hong-Tai Chang, Sung-Chou Li, Meng-Ru Ho, Hung-Wei Pan, Luo-Ping Ger…

Journal:

Year:

2012

Language:

english

File:

PDF, 539 KB

english, 2012

16

Comparison and evaluation of pathway-level aggregation methods of gene expression data

Journal:

Year:

2012

Language:

english

File:

PDF, 873 KB

english, 2012

17

A de novo next generation genomic sequence assembler based on string graph and MapReduce cloud computing framework

Yu-Jung Chang, Chien-Chih Chen, Chuen-Liang Chen, Jan-Ming Ho

Journal:

Year:

2012

Language:

english

File:

PDF, 363 KB

english, 2012

18

A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription

Alexis Vandenbon, Yutaro Kumagai, Shizuo Akira, Daron M Standley

Journal:

Year:

2012

Language:

english

File:

PDF, 993 KB

english, 2012

19

Computational discovery and RT-PCR validation of novelBurkholderiaconserved andBurkholderia pseudomalleiunique sRNAs

Jia-Shiun Khoo, Shiao-Fei Chai, Rahmah Mohamed, Sheila Nathan…

Journal:

Year:

2012

Language:

english

File:

PDF, 1.14 MB

english, 2012

20

iLOCi: a SNP interaction prioritization technique for detecting epistasis in genome-wide association studies

Jittima Piriyapongsa, Chumpol Ngamphiw, Apichart Intarapanich…

Journal:

Year:

2012

Language:

english

File:

PDF, 830 KB

english, 2012

21

Whole-genome sequencing and identification ofMorganella morganiiKT pathogenicity-related genes

Yu-Tin Chen, Hwei-Ling Peng, Wei-Chung Shia, Fang-Rong Hsu, Chuian-Fu Ken…

Journal:

Year:

2012

Language:

english

File:

PDF, 322 KB

english, 2012

22

MicroRNA-centric measurement improves functional enrichment analysis of co-expressed and differentially expressed microRNA clusters

Su Yeon Lee, Kyung-Ah Sohn, Ju Han Kim

Journal:

Year:

2012

Language:

english

File:

PDF, 963 KB

english, 2012

23

Space-related pharma-motifs for fast search of protein binding motifs and polypharmacological targets

Yi-Yuan Chiu, Chun-Yu Lin, Chih-Ta Lin, Kai-Cheng Hsu, Li-Zen Chang…

Journal:

Year:

2012

Language:

english

File:

PDF, 799 KB

english, 2012

24

The parasite specific substitution matrices improve the annotation of apicomplexan proteins

Jamshaid Ali, Shashi Rekha Thummala, Akash Ranjan

Journal:

Year:

2012

Language:

english

File:

PDF, 721 KB

english, 2012

25

An approach to identifying drug resistance associated mutations in bacterial strains

Michal Wozniak, Jerzy Tiuryn, Limsoon Wong

Journal:

Year:

2012

Language:

english

File:

PDF, 507 KB

english, 2012

26

Discovering pathway cross-talks based on functional relations between pathways

Chia-Lang Hsu, Ueng-Cheng Yang

Journal:

Year:

2012

Language:

english

File:

PDF, 568 KB

english, 2012

27

Disease gene identification by random walk on multigraphs merging heterogeneous genomic and phenotype data

Yongjin Li, Jinyan Li

Journal:

Year:

2012

Language:

english

File:

PDF, 440 KB

english, 2012

28

Metagenomic profiles of free-living archaea, bacteria and small eukaryotes in coastal areas of Sichang island, Thailand

Naraporn Somboonna, Anunchai Assawamakin, Alisa Wilantho…

Journal:

Year:

2012

Language:

english

File:

PDF, 1.59 MB

english, 2012

29

Helminth secretome database (HSD): a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs)

Garg, Gagan, Ranganathan, Shoba

Journal:

Year:

2012

Language:

english

File:

PDF, 667 KB

english, 2012

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